genome.jgi.doe.govJGI Genome Portal - Home

Skip To Main Content JGI Home Genome Portal Login ({{getPortalsInCart()}} items) My favorites: {{currentFavorite}} Please login Feedback Advanced Search Search Within: By: Funding Program Program Year Taxonomy Project Status Scientific Program Product Type For additional search capabilities please use GOLD Show: Published Organisms Only Superseded On November 18, 2020 the JGI computer systems will be undergoing maintenance. The website will be down from 9:00am to 10:00am PDT. Access to tools and files will be restricted. Sorry for the inconvenience. Non-Public Included Show Highlights Without restrictions (superusers only) {{searchResults.total}} results found {{totalSelected}} selected Close Table Reports Reports Legend: Legend Project identity FD - Final Deliverable Project SP - Sequencing Project information and data AP - Analysis Project information and data JGI sequenced data - MycoCosm related genome/group resource and analysis tools - IMG related genome resource and analysis tools - Phytozome related genome resource and analysis tools Non-public resource - Non-public resource. Access can be restricted. For access information please email to Principal investigator Group - Proposal/Group of Projects Please login Add Selected to Cart Please login Save Selected Results Please login Save All Results 1) Choose your filter for files or skip this section by File Type: OR/AND by File Name Pattern: Please use regular expression! Type .*\.gff to get all files that are ending with ".gff". Type .*assembled.* to get files that have "assembled" in the name of the file. Read more about patterns here Selected file types : {{selectedTypesStr}} 2) Download files from the listed below portals Portals: {{getPortalsInCart()}} Files: {{totalFileCount}} Size: {{totalDataSize}} Download Download via Globus Delete record Name Name Resources JGI Info JGI Info Product Product Status Contacts Taxonomy Other Data Delete record Superseded by: Download Restricted access. Data is private. elviz Properties Access Control Genome Portals: Img taxon oid: JGI Project Id: JGI Project Id: Related Projects: Related Projects: JGI Proposal Id: / JGI Proposal Id: Directory Number: Release Date: , Project Status Date: Proposal/FD PI: Proposal PI: {{getFdPrefix($index)}}PI: {{getFdPrefix($index)}}Co-PIs: Sample Contact: Taxonomy: NCBI Project Id: Ecosystem: Ecosystem Category: Ecosystem Sub Type: Ecosystem Type: Specific Ecosystem: Genbank Accession Id: ENA Accession Id: Lineage hit: Lineage Taxonomy Id: Genus: Species: Strain: TaxonomyID for Sequencing Projects: Short name: Proposal Short name: Proposal name: Sample site: Habitat: Img submission id: Superkingdom: Scientific Program: Funding Program: Gold Id: Group: Files: Size: Searching for Projects Explore what you can do here. Search projects/proposals using “Advanced Search” filters. Downloading Files Download over the web Download large number of files with Globus service . Download via API using scripting or programming Download with "Cart" by collecting projects/portals of your interest. Looking for Access Looking for data and do not have access to the private portal? Please contact PI How to grant access to your proposal/project/genome? Get Instructions. 1 / 2 Designed by iconicbestiary / Freepik Take Survey 2 / 2 New Feature: "Bulk Downloads" collect your favorite projects and download them in bulk with our new feature "CART" . Ability to download files with Portal or via Globus. Find out more details ❮ ❯ What's New My Favorites : New Feature - Based on Your Feedback This feature allows to save your filtered search results to "My Favorites" and access it later. In addition, you can find under "My Favorites" link the list of your "Private Projects" as well as "All Projects" you have/had a special access to. Download with Cart A convenient way to collect projects/genomes/metagenomes of your interest and download all files associated with them in bulk . Read more and provide your comments and suggestions for this feature to our team. The "Tree of Life" Please use our powerful search or go to the "Tree of Life" if it is the most convenient way for you to reach your genomes/projects. Explore other JGI Systems Visit JGI Data Management & Analysis Systems for comparative analysis and annotation of all publicly available genomes. Search Projects Search Projects by selecting within "JGI Projects" and clicking "Show All" to get up to date information about JGI projects. You can also search for projects by many criteria. Search for Proposals Find proposals if your know the Proposal name or Proposal ID Search for Genomes Find genomes by keyword, organism name, JGI Project Id, etc. Search for Groups Custom Groups among with Taxonomy Groups can be found by keyword, name, taxonomy ID Track Projects with "My Favorites" Please login in order to save your search queries and access them in your "Favorites". Genomes OnLine Database (GOLD) - a resource for sequencing projects and associated metadata. Integrated Microbial Genomes (IMG) and Metagenomes (IMG/M) - resources for comparative analysis and annotation. MycoCosm & PhycoCosm - access to data, visualization, and analysis tools for comparative genomics of fungi or algae. Phytozome - a hub for accessing, visualizing and analyzing plant genomes. Contact Us Disclaimer Cite Us Credits Survey 2017 -- Accessibility/Section 508 © 1997-2020 The Regents of the University of California. Genome Portal version:8.18.51 content:d785ba3bdf jgi-portal-web-4 Release Date:08-Oct-2020 16:11:27.583 PST Current Date:18-Nov-2020 03:16:30.845 PST Communicating. Please wait ......